August 9, 2026 - The Plant Genome publishes novel research in plant genomics, including genome biology, functional genomics, and genomic innovations for crop improvement. With a focus on frontier advances and technological breakthroughs, the journal accelerates ...

January 4, 2024 - Currently Phytozome provides access to 58 sequenced and annotated green plant genomes. Kew Royal Botanic Garden’s Plant DNA C-values database contains C-values for 8,510 angiosperm, gymnosperm, pteridopghyte, bryophyte and algal species. Users can choose between analysing C-value data across different groups of plants, or searching just part of the database by selecting the specific plant group of interest. The Plant rDNA database is an online resource providing information on numbers and positions of ribosomal DNA signals and their structures for 2770 plant species (4948 entries).

July 16, 2026 - Plant research faces unique challenges in biological and genetic diversity, such as teasing out the frequent segmental and whole genome duplications that often result in large gene families and subfunctionalization of their member genes. These plant genome features add layers of complexity to the already intricate nature of eukaryotic gene expression and regulatory networks.

The generation of gene regulatory networks from thousands of maize transcriptome data sets identifies putative transcription factor targets and candidate regulators of important metabolic pathways. AthCNV: A Map of DNA Copy Number Variations in the Arabidopsis Genome ... The Plant Cell, Volume 32, Issue 6, June 2020, Pages 1797–1819, https://doi.org/10.1105/tpc.19.00640 ... A catalog of large copy number variations (CNVs), CNV-overlapping genes, and their genotypes in 1060 Arabidopsis accessions will stimulate studies on the genetic basis of phenotypic variation.

Recent technological advancements have substantially expanded our ability to analyze and understand plant genomes and to reduce the gap existing between genotype and phenotype. The fast evolving field of genomics allows scientists to analyze thousand of genes in parallel, to understand the genetic architecture of plant genomes and also to isolate the genes responsible for mutations. Furthermore, whole genomes can now be sequenced.

Heather M. Coyle, in Encyclopedia of Forensic Sciences, Third Edition, 2023 · This database is hosted by The Plant Molecular Biology Institute (IBMP) and is a compiled set of tRNA sequences from all three genomes commonly found in plants; the nuclear, mitochondrial and plastid genomes.

Click here to fill out a survey to let us know about yourself and your scenario, or register to have a conversation with us. Phytozome, the Plant Comparative Genomics portal of the Department of Energy's Joint Genome Institute, provides JGI users and the broader plant science community a hub for accessing, visualizing and analyzing JGI-sequenced plant genomes, as well as selected genomes and datasets that have been sequenced elsewhere.

Furthermore, whole genomes can now be sequenced. This review addresses these issues and also discusses ways to extract biological meaning from DNA data. Although genomic issuesare addressed from a plant perspective, this review provides insights into the genomic analyses of other organisms. Key terms: genomics, Arabidopsis thaliana, Oryza sativa, plant breeding, gene discovery ... Until very recently, the molecular analysis of plants often focused on the single gene level.

These technologies will generate enormous amount of sequencing data, which will be beneficial to understand the basic physiology of plants. This issue of Current Genomics is a compilation of review articles on various facets of plant genomics written by experts.

This Collection presents a series of articles describing genomics, transcriptomics, metagenomics, or datasets related to species or plants of ecological or agricultural interest.

Welcome to the new Ensembl — home to thousands of genomes ready to explore in our new fast interface. You will find genomes we’ve shared before, plus a growing collection of new species and annotation data.

Explore the complexity of plant genomes! Discover insights on polyploidy, genome duplication, and advanced sequencing for sustainable agriculture.

October 19, 2020 - The plant DNA C-values database (release 7.1): An updated online repository of plant genome size data for comparative studies. New Phytologist, 226, 301–305. https://doi.org/10.1111/nph.16261 ... Pteridophyte Phylogeny Group (PPG) (2016). A community-derived classification for extant lycophytes and ferns. Journal of Systematics and Evolution, 54, 563–603. ... Puttick, M. N., Clark, J. W., & Donoghue, P. C. J. (2015). Size is not everything: Rates of genome size evolution, not C-value, correlate with speciation in angiosperms.

Search for protein sequence-related information based on whole-genome analysis. MetaCrop -- a detailed database of crop plant metabolism · A database that summarizes diverse information about metabolic pathways in crop plants and allows automatic export of information for the creation of detailed metabolic models. NIASGBdb -- National Institute of Agrobiological Sciences Gene Bank DataBase · Find information about agricultural plant genetics and diseases.

July 14, 2016 - Plant genomics aims to sequence, characterize, and study the genetic compositions, structures, organizations, functions, and interactions/networks of an entire plant genome. Its development and advances are tightly interconnected with proteomics, ...

PlantGDB (http://www.plantgdb.org/) is a database of molecular sequence data for all plant species with significant sequencing efforts. The database organizes EST sequences into contigs that represent tentative unique genes. Contigs are annotated ...

[8] summarizes recent developments in plant genomics and their application, with an emphasis on cereal crops. They discuss genome sequencing approaches, quantitative trait loci (QTL) mapping and genome-wide association (GWAS) studies, directed mutagenesis, plant non-coding RNAs, gene editing using CRISPR-Cas9, and complementation of crop genotyping by crop phenotyping. Noncoding RNAs (ncRNAs) modulate mRNA or protein profiles. ncRNAs are essential for growth and development in plants and have emerged as key players in guarding plants during stress conditions.

Identifying the causal mutation of a phenotype can be accelerated by combining genetic mapping with whole genome sequencing, in a process termed mapping-by-sequencing, and James et al. [9] describe important new guidelines for mapping-by-sequencing in Arabidopsis. They generate a Perl-based simulation tool called Pop-seq, which simulates mapping populations to determine the number of plants and the sequencing depth required to identify candidate mutations in outcrossed and backcrossed mapping populations.

Although the information in these ... projects databases that can be used when information on plant genomes is required, GOLD (Genomes Online Database), NCBI genomes, CoGepedia and plaBi (Table 1)....

Check which features are supported on each species here; if you would like to request a new species please email Helpdesk. The new Ensembl provides access to over 4700 genomes: http://beta.ensembl.org · There are over 4100 animal, 470 plant, and 100 fungal genomes ready to explore.